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(B , E , M , P , T )
Assistant Professor
Selected Publications

BS : Peking University, 1996
PhD : University of Minnesota, 2001
PostDoc : University of Pennsylvania, 2001-2003

Phone:  225-578-4094
E-Mail:  binchen@lsu.edu
Office:  427 Choppin Hall


Area of Interest

My research is directed toward understanding the relationships between the microscopic structures and molecular interactions and the macroscopic properties for systems of chemical, environmental, and biological interest. This knowledge is of fundamental importance for the molecular sciences and of practical importance in process and material design. My research tool is computer simulation empowered by different levels of theories (from ab initio to classical). Two major research directions are being pursued currently: nucleation and biomimetic material design.

Apart from its fundamental and practical importance, nucleation is a project ideal for testing/developing novel theories, computational methods, and force fields. The concept nucleation originated from the studies of phase transition and was laterly expanded considerably to encompass many other areas, such as self-assembly and protein folding. The simulation algorithm recently developed by the author allows very efficient calculations of the free energy profile of nucleation pathways. This method has been applied to several systems for which systematic discrepancies have been found between the experiments and the classical nucleation theory.

The design of cheap and synthetic polymers with predictable well-defined structures and properties that mimic natural bio-molecules is an important endeavor. Recent research on some novel beta-peptides and non-natrual antimicrobial materials has demonstrated the viability of computation in this design effort. The conformational properties of these molecules were predicted by computer simulations and then confirmed by experiments. Some of the work has been featured by Chemical & Engineering News and Pittsburgh Supercomputing Center.



Selected Publications
B. Chen, R.B. Nellas, and S.J. Keasler.  Fractal aggregates in protein crystal nucleationJ. Phys. Chem. B, 2008, 112, 4725-4730
R.B. Nellas, S.J. Keasler, and B. Chen.  Molecular content and structure of aqueous organic nanodroplets from the vapor-liquid nucleation study of the water/n-nonane/1-alcohol seriesJ. Phys. Chem. A, 2008, 112, 2930-2939
R.B. Nellas and B. Chen.  Towards understanding the nucleation mechanism for multi-component systems: An atomistic simulation of the ternary nucleation of water/n-nonane/1-butanolPhys. Chem. Chem. Phys., 2008, 10, 506-514
B. Chen, H. Kim, S.J. Keasler, and R.B. Nellas.  An aggregation-volume-bias Monte Carlo investigation on the condensation of a Lennard-Jones vapor and crystal nucleation in cluster systems: An in-depth evaluation of the classical nucleation theoryJ. Phys. Chem. B, 2008, 112, 4067-4078
R.B. Nellas, B. Chen, and J.I. Siepmann.  Dumbbells and Onions in Ternary NucleationPhys. Chem. Chem. Phys., 2007, 9, 2779-2781
B. Chen and J.I. Siepmann.  Microscopic structure and solvation in dry and wet octanolJournal of Physical Chemistry B, 2006, 110, 3555-3563
Ling Zhang, Jake L. Rafferty, J.Ilja Siepmann, Bin Chen and Mark R. Schure.  Chain conformation and solvent partitioning in reversed-phase liquid chromatography: Monte Carlo simulations for various water/methanol concentrationsJ. Chromatogr. A, 2006, 1126, 219-231
S.J. Keasler, R.B. Nellas, and B. Chen.  Water mediated attraction between repulsive ions - A cluster-based simulation approachJ. Chem. Phys., 2006, 125, 144520
J.Q. Wei, H.W. Zhu, Y.H. Li, B. Chen, Y. Jia, K.L. Wang, Z.C. Wang, W.J. Liu, J.B. Luo, M.X. Zheng, D.H. Wu, Y.Q. Zhu, and B.Q. Wei.  Ultrathin single-layered membranes from double-walled carbon nanotubesAdv. Mater., 2006, 18, 1695-1700
Ricky B. Nellas, Matthew E. McKenzie, and Bin Chen.  Probing the nucleation mechanism for the binary n-nonane/1-alcohol series with atomistic simulationsJ. Phys. Chem. B, 2006, 110, ASAP article
M.E. McKenzie and B. Chen.  Unravelling the peculiar nucleation mechanisms for non-ideal binary mixtures with atomistic simulationsJ. Phys. Chem. B, 2006, 110, 3511-3516
Y.A. Mantz, B. Chen, and G.J. Martyna.  Structural correlation and motifs in liquid water at selected temperatures: Ab initio and empirical model predictionsJournal of Physical Chemistry B, 2006, 110, 3540-3554
I.-F.W. Kuo, C.J. Mundy, B.L. Eggimann, M.J. McGrath, J.I. Siepmann, B. Chen, J. Vieceli, and D.J. Tobias.  Structure and dynamics of the aqueous liquid-vapor interface: A comprehensive particle-based simulation studyJournal of Physical Chemistry B, 2006, 110, 3738-3746
I. Ivanov, B. Chen, S. Raugei, and M.L. Klein.  Relative pKa values from first principles molecular dynamics: The case of histidine deprotonationJournal of Physical Chemistry B, 2006, 110, 6365-6371
Y.A. Mantz, B. Chen, and G.J. Martyna.  Temperature-dependent water structure: Ab initio and empirical model predictions.  Chem. Phys. Lett., 2005, 405, 294-299
B. Chen, J.I. Siepmann, and M.L. Klein.  Simulating vapor-liquid nucleation of water: A combined histogram-reweighting and aggregation-volume-bias Monte Carlo investigation for fixed-charge and polarizable modelsJ. Phys. Chem. A, 2005, 109, 1137-1145
X.S. Zhao, B. Chen, S. Karaborni, and J.I. Siepmann.  Vapor-liquid and vapor-solid phase equilibria for united-atom benzene models and their triple points: The importance of quadrupolar interactionsJ. Phys. Chem. B, 2005, 109, 5368-5374
R.J. Doerksen, B. Chen, D. Liu, G. Tew, W.F. DeGrado, and M.L. Klein.  Controlling the conformation of arylamides: Computational studies of intramolecular hydrogen bonds between amides and ethers or thioethersChem. Eur. J., 2004, 10, 5008-5016
I.-F.W. Kuo, C.J. Mundy, M.J. McGrath, J.I. Siepmann, J. VandeVondele, M. Sprik, J. Hutter, B. Chen, M.L. Klein, F. Mohamed, M. Krack, and M. Parrinello.  Liquid water from first principle: Validation of different sampling approachesJ. Phys. Chem. B, 2004, 108, 12990-12998
D. Liu, S. Choi, B. Chen, R.J. Doerksen, D.J. Clements, J.D. Winkler, M.L. Klein, and W.F. DeGrado.  Nontoxic membrane-active antimicrobial arylamide oligomersAng. Chem. Int. Ed., 2004, 43, 1158-1162
B. Chen, I. Ivanov, M.L. Klein, and M. Parrinello.  Hydrogen bonding in waterPhys. Rev. Lett., 2003, 91, 215503
B. Chen, J. I. Siepmann, and M. L. Klein.  Simulating the nucleation of water/ethanol and water/n-nonane mixtures: Mutual enhancement and two-pathway nucleationJ. Am. Chem. Soc., 2003, 125, 3113-3118
B. Chen, J.I. Siepmann, S. Karaborni, and M.L. Klein.  Vapor-liquid and vapor-solid phase equilibria of fullerenes: The role of the potential shape on the triple pointJ. Phys. Chem. B, 2003, 107, 12320-12323
R.J. Doerksen, B. Chen, J. Yuan, J.D. Winkler, and M. L. Klein.  Novel conformationally-constrained beta-peptides characterized by 1H NMR chemical shiftsChem. Comm., 2003, 20, 2534-2535
R.J. Doerksen, B. Chen, and M.L. Klein.  Intramolecular hydrogen bonds: Ab initio Car-Parrinello simulations of arylamide torsionChem. Phys. Lett., 2003, 380, 150-157
G. Tew, D. Liu, B. Chen, R.J. Doerksen, J. Kaplan, P.J. Carroll, M.L. Klein, and W.F. DeGrado.  De novo design of biomimetic antimicrobial polymersProc. Natl. Acad. Sci., 2002, 99, 5110-5114
B. Chen, I. Ivanov, J.M. Park, M. Parrinello, and M.L. Klein.  Solvation structure and mobility mechanism of OH-: A Car-Parrinello molecular dynamics investigation of alkaline solutionsJ. Phys. Chem. B, 2002, 106, 12006-12016
B. Chen, J.I. Siepmann, K.J. Oh, and M.L. Klein.  Simulating vapor-liquid nucleation of n-alkanesJ. Chem. Phys., 2002, 116, 4317-4329
B. Chen, J.M. Park, I. Ivanov, G. Tabacchi, M.L. Klein, and M. Parrinello.  First principles study of aqueous hydroxide solutionsJ. Am. Chem. Soc., 2002, 124, 8534-8535
B. Chen, J.I. Siepmann, and M.L. Klein.  Vapor-liquid interfacial properties of mutually saturated water/1-butanol solutionsJ. Am. Chem. Soc., 2002, 124, 12232-12237
B. Chen, J.J. Potoff, and J.I. Siepmann.  Monte Carlo calculations for alcohols and their mixtures with alkanes. Transferable potentials for phase equilibria. 5. United-atom description of primary, secondary and tertiary alcoholsJ. Phys. Chem. B, 2001, 105, 3093--3104
B. Chen, J.I. Siepmann, K.J. Oh, and M.L. Klein.  Aggregation-volume-bias Monte Carlo simulations of vapor-liquid nucleation barriers for Lennard-JonesiumJ. Chem. Phys., 2001, 115, 10903-10913
B. Chen, J.I. Siepmann, and M.L. Klein.  Direct Gibbs ensemble Monte Carlo simulations for solid-vapor phase equilibria: Applications to Lennard-Jonesium and carbon dioxideJ. Phys. Chem. B, 2001, 105, 9840-9848
B. Chen and J.I. Siepmann.  Improving the efficiency of the aggregation-volume-bias Monte Carlo algorithmJ. Phys. Chem. B, 2001, 105, 11275-11282
B. Chen, J.J. Potoff, and J.I. Siepmann.  Adiabatic nuclear and electronic sampling Monte Carlo simulations in the Gibbs ensemble: Application to polarizable force fields for waterJ. Phys. Chem. B, 2000, 104, 2378-2390
B. Chen and J.I. Siepmann.  A novel Monte Carlo algorithm for simulating strongly associating fluids: Applications to water, hydrogen fluoride, and acetic acidJ. Phys. Chem. B, 2000, 104, 8725-8734
B. Chen, J. Xing, and J.I. Siepmann.  Development of polarizable water force fields for phase equilibrium calculationsJ. Phys. Chem. B, 2000, 104, 2415-2423
B. Chen and J.I. Siepmann.  Partitioning of alkane and alcohol solutes between water and (dry or wet) 1-octanolJ. Am. Chem. Soc., 2000, 122, 6464-6467